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Effect of flux penalty coefficient on ablation study

Requires #26 (closed).

Effects to study:

  • growth rate
  • ablation bar plot
  • ratio

For MATLAB implementation

  • Get MATLAB to load the ecYeast8 model and optimise for growth rate
  • Try minimising the taxicab norm (minNorm = 'one' in optimizeCbModel), see how it affects growth rate.
  • Try regularising FBA by setting minNorm to real numbers, starting from 1e-6 and sweep around, see how it affects growth rate.
  • (If I still have an appetite for pain) Re-implement ablation in MATLAB.
Edited by Arin Wongprommoon