Effect of flux penalty coefficient on ablation study
Requires #26 (closed).
Effects to study:
-
growth rate -
ablation bar plot -
ratio
For MATLAB implementation
-
Get MATLAB to load the ecYeast8 model and optimise for growth rate -
Try minimising the taxicab norm ( minNorm = 'one'
inoptimizeCbModel
), see how it affects growth rate. -
Try regularising FBA by setting minNorm
to real numbers, starting from 1e-6 and sweep around, see how it affects growth rate. -
(If I still have an appetite for pain) Re-implement ablation in MATLAB.
Edited by Arin Wongprommoon